Organoidomics

Please contact Prof. Semin Lee, Jinho Jang or Web-master for any inquires.

3D Organoids

3D Organoids

RAMP

RAMP

Clinical Information

IDDiagnosisStageAgeBMISexCA19-9
P5PDAC & Lung Cancer (lung NED, PDAC with peritoneal seeding)46728.3Male2.64

Mutation Profiles

Primary Tumor

IDGeneCHROMPOSREFALTConsequenceHGVScHGVSpVAF
P5-TissueCSMD2134011696GAMissense_MutationENST00000373381.4:c.9041C>TENSP00000362479.4:p.Ser2870Leu0.05747126
P5-TissueKCNA21111146840GAMissense_MutationENST00000485317.1:c.565C>TENSP00000433109.1:p.Arg189Trp0.04313725
P5-TissueKCNS3218112885GAMissense_MutationENST00000403915.1:c.610G>AENSP00000385968.1:p.Val204Ile0.01273885
P5-TissuePCDHA95140230122GAMissense_MutationENST00000532602.1:c.2042G>AENSP00000436042.1:p.Arg681Gln0.02321083
P5-TissuePLXNA47131866930CTMissense_MutationENST00000359827.3:c.3178G>AENSP00000352882.3:p.Val1060Ile0.04545454
P5-TissueFOXD49117371CGMissense_MutationENST00000382500.2:c.749G>CENSP00000371940.2:p.Gly250Ala0.15116279
P5-TissueCOL27A19116930880CTMissense_MutationENST00000356083.3:c.1045C>TENSP00000348385.3:p.Arg349Cys0.02227171
P5-TissueGOLGA29131023841CTSplice_SiteENST00000609374.1:c.1108-1G>A0.04460966
P5-TissueARHGAP221049687765GAMissense_MutationENST00000435790.2:c.383C>TENSP00000416701.2:p.Ala128Val0.05607476
P5-TissueCACNB31249221471CTMissense_MutationENST00000547392.1:c.1163C>TENSP00000446529.1:p.Thr388Ile0.01957831
P5-TissueGRASP1252404706GAMissense_MutationENST00000293662.4:c.338G>AENSP00000293662.4:p.Gly113Asp0.01793722
P5-TissueTPTE21320067011ACMissense_MutationENST00000457266.2:c.98T>GENSP00000442218.1:p.Leu33Arg0.34375
P5-TissueZNF6461631092620GAMissense_MutationENST00000394979.2:c.4975G>AENSP00000378429.2:p.Ala1659Thr0.04471544
P5-TissueESRP21668266492ATMissense_MutationENST00000565858.1:c.839T>AENSP00000454554.1:p.Leu280His0.02312138
P5-TissueTP53177578406CTMissense_MutationENST00000455263.2:c.524G>AENSP00000398846.2:p.Arg175His0.02564102
P5-TissueSPPL2C1743924263CTMissense_MutationENST00000329196.5:c.1991C>TENSP00000332488.5:p.Ala664Val0.02935420
P5-TissueRP4-576H24.4201559023CCACFrame_Shift_DelENST00000564763.1:c.392_393delENSP00000457944.1:p.Val131GlyfsTer30.03384615
P5-TissueKIAA17552036869597CAMissense_MutationENST00000279024.4:c.936G>TENSP00000279024.4:p.Lys312Asn0.04395604
P5-TissueKRTAP13-32131797791CAMissense_MutationENST00000390690.2:c.440G>TENSP00000375109.2:p.Cys147Phe0.03448275
P5-TissueKRTAP10-62146011978ATMissense_MutationENST00000400368.1:c.388T>AENSP00000383219.1:p.Cys130Ser0.04065040
P5-TissueFRMPD4X12736390CTMissense_MutationENST00000380682.1:c.3445C>TENSP00000370057.1:p.Arg1149Cys0.06111111
P5-TissueZXDBX57618621TCMissense_MutationENST00000374888.1:c.140T>CENSP00000364023.1:p.Leu47Pro0.15

Organoid

IDGeneCHROMPOSREFALTConsequenceHGVScHGVSpVAF
P5-OrganoidCSMD2134011696GAMissense_MutationENST00000373381.4:c.9041C>TENSP00000362479.4:p.Ser2870Leu0.19463087
P5-OrganoidCOL8A2136563720GAMissense_MutationENST00000481785.1:c.1367C>TENSP00000436433.1:NA0.13259668
P5-OrganoidRIMS3141094559TAMissense_MutationENST00000372684.3:c.637A>TENSP00000361769.3:NA0.15533980
P5-OrganoidKCNA21111146840GAMissense_MutationENST00000485317.1:c.565C>TENSP00000433109.1:p.Arg189Trp0.23880597
P5-OrganoidDENND2C1115168468ATMissense_MutationENST00000393277.1:c.138T>AENSP00000376958.1:NA0.05633802
P5-OrganoidLINGO41151774193CAMissense_MutationENST00000368820.3:c.988G>TENSP00000357810.3:p.Asp330Tyr0.02325581
P5-OrganoidBCAN1156617855AGMissense_MutationENST00000361588.5:c.722A>GENSP00000354925.5:p.Asp241Gly0.04794520
P5-OrganoidBRINP31190067654TCTFrame_Shift_DelENST00000534846.1:c.1488delENSP00000438022.1:p.Thr497LeufsTer140.04310344
P5-OrganoidKCNK21215179287GTMissense_MutationENST00000391895.2:c.23G>TENSP00000375765.2:p.Arg8Met0.07692307
P5-OrganoidKCNS3218112885GAMissense_MutationENST00000403915.1:c.610G>AENSP00000385968.1:p.Val204Ile0.07209302
P5-OrganoidKCNS3218112957GAMissense_MutationENST00000403915.1:c.682G>AENSP00000385968.1:p.Ala228Thr0.02898550
P5-OrganoidDPYSL5227157527CTMissense_MutationENST00000401478.1:c.872C>TENSP00000385549.1:p.Ala291Val0.08130081
P5-OrganoidGPR452105858853CTMissense_MutationENST00000258456.1:c.538C>TENSP00000258456.1:p.Pro180Ser0.05483871
P5-OrganoidCCDC174314709664GAMissense_MutationENST00000383794.3:c.928G>AENSP00000373304.3:p.Gly310Ser0.16666666
P5-OrganoidTNNC1352485854CTMissense_MutationENST00000232975.3:c.223G>AENSP00000232975.3:p.Asp75Asn0.3
P5-OrganoidPDZRN3373433783CTMissense_MutationENST00000535920.1:c.1100G>AENSP00000442026.1:p.Arg367His0.04676259
P5-OrganoidMAATS13119445155GAMissense_MutationENST00000273390.5:c.820G>AENSP00000273390.5:p.Glu274Lys0.12371134
P5-OrganoidALDH1L13125854502TCMissense_MutationENST00000472186.1:c.1348A>GENSP00000420293.1:p.Ile450Val0.06698564
P5-OrganoidIFT803160025475GAMissense_MutationENST00000496589.1:c.641C>TENSP00000420646.1:p.Thr214Met0.10526315
P5-OrganoidKCTD8444177010GAMissense_MutationENST00000360029.3:c.1219C>TENSP00000353129.3:p.Arg407Cys0.08947368
P5-OrganoidFRYL448608515TAMissense_MutationENST00000537810.1:c.681A>TENSP00000441114.1:p.Lys227Asn0.10084033
P5-OrganoidHSD17B45118832319CTMissense_MutationENST00000515320.1:c.896C>TENSP00000424613.1:p.Thr299Met0.08860759
P5-OrganoidLOX5121413238GAMissense_MutationENST00000231004.4:c.443C>TENSP00000231004.4:p.Pro148Leu0.03030303
P5-OrganoidMZB15138723794ACMissense_MutationENST00000412103.2:c.53T>GENSP00000414565.2:p.Val18Gly0.08450704
P5-OrganoidPCDHA95140230122GAMissense_MutationENST00000532602.1:c.2042G>AENSP00000436042.1:p.Arg681Gln0.27568922
P5-OrganoidPCDHB85140558171CTMissense_MutationENST00000239444.2:c.556C>TENSP00000239444.2:p.Arg186Cys0.11065573
P5-OrganoidDSP67584376CAMissense_MutationENST00000418664.2:c.5084C>AENSP00000396591.2:p.Ala1695Asp0.04
P5-OrganoidRGS176153365078TGMissense_MutationENST00000367225.2:c.76A>CENSP00000356194.1:p.Asn26His0.20588235
P5-OrganoidSMOC26168999654CTMissense_MutationENST00000356284.2:c.794C>TENSP00000348630.2:p.Thr265Met0.07874015
P5-OrganoidSNX13717841230GAMissense_MutationENST00000428135.3:c.2279C>TENSP00000398789.2:p.Ser760Leu0.10588235
P5-OrganoidHECW1743484504CTMissense_MutationENST00000453890.1:c.1733C>TENSP00000407774.1:p.Ala578Val0.09138381
P5-OrganoidSPDYE1744046934GAMissense_MutationENST00000258704.3:c.700G>AENSP00000258704.3:p.Gly234Arg0.04966887
P5-OrganoidSMURF1798648560GTMissense_MutationENST00000361125.1:c.862C>AENSP00000354621.1:p.Gln288Lys0.16981132
P5-OrganoidTMEM1687112424237GGAFrame_Shift_InsENST00000454074.1:c.643dupENSP00000390696.1:p.Ser215PhefsTer220.125
P5-OrganoidPLXNA47131866930CTMissense_MutationENST00000359827.3:c.3178G>AENSP00000352882.3:p.Val1060Ile0.17037037
P5-OrganoidTRBC27142498959GAMissense_MutationENST00000466254.1:c.235G>AENSP00000417300.1:p.Arg79His0.1121673
P5-OrganoidKAT6A841844990GTMissense_MutationENST00000485568.1:c.692C>AENSP00000430606.1:p.Ala231Asp0.12
P5-OrganoidAARD8117950501CTMissense_MutationENST00000378279.3:c.19C>TENSP00000367528.3:p.Arg7Cys0.1
P5-OrganoidFAM135B8139163572TCMissense_MutationENST00000395297.1:c.3146A>GENSP00000378710.1:p.Lys1049Arg0.09890109
P5-OrganoidARID3C934623622CTMissense_MutationENST00000378909.2:c.665G>AENSP00000368189.2:p.Arg222His0.24880382
P5-OrganoidC9orf129996097804CTMissense_MutationENST00000375419.1:c.217G>AENSP00000364568.1:p.Glu73Lys0.02643171
P5-OrganoidCOL27A19116930880CTMissense_MutationENST00000356083.3:c.1045C>TENSP00000348385.3:p.Arg349Cys0.21568627
P5-OrganoidGOLGA29131023841CTSplice_SiteENST00000609374.1:c.1108-1G>A0.27160493
P5-OrganoidPRRC2B9134330507GTMissense_MutationENST00000458550.1:c.1165G>TENSP00000398853.1:p.Asp389Tyr0.26168224
P5-OrganoidSVIL1029811448CANonsense_MutationENST00000375400.3:c.2002G>TENSP00000364549.3:p.Glu668Ter0.06989247
P5-OrganoidARHGAP221049687765GAMissense_MutationENST00000435790.2:c.383C>TENSP00000416701.2:p.Ala128Val0.15702479
P5-OrganoidZNF5031077159052ATCCGGACTTCAGCGAFrame_Shift_DelENST00000535216.1:c.1382_1395delENSP00000438988.1:p.Ala461ValfsTer440.07983193
P5-OrganoidGLUD11088834343CAMissense_MutationENST00000544149.1:c.212G>TENSP00000444732.1:p.Arg71Met0.125
P5-OrganoidSORCS310107005354GCMissense_MutationENST00000369701.3:c.2923G>CENSP00000358715.3:p.Asp975His0.16379310
P5-OrganoidVWA210116048814TCMissense_MutationENST00000603594.1:c.1688T>CENSP00000473752.1:p.Val563Ala0.11650485
P5-OrganoidDCHS1116661869GAMissense_MutationENST00000299441.3:c.976C>TENSP00000299441.3:p.Arg326Trp0.12977099
P5-OrganoidCCDC731132657248CGMissense_MutationENST00000335185.5:c.1179G>CENSP00000335325.5:p.Lys393Asn0.13333333
P5-OrganoidKIAA1549L1133581396CAMissense_MutationENST00000389726.3:c.3084C>AENSP00000374376.3:p.Ser1028Arg0.14942528
P5-OrganoidTTC1211113211403TAMissense_MutationENST00000529221.1:c.844T>AENSP00000433757.1:p.Phe282Ile0.02580645
P5-OrganoidHTR3B11113802589TAMissense_MutationENST00000537778.1:c.335T>AENSP00000443118.1:p.Phe112Tyr0.06161137
P5-OrganoidSLC6A1212304450CTMissense_MutationENST00000536824.1:c.1370G>AENSP00000444268.1:p.Ser457Asn0.05113636
P5-OrganoidKRAS1225398284CTMissense_MutationENST00000557334.1:c.35G>AENSP00000452512.1:p.Gly12Asp0.21052631
P5-OrganoidCACNB31249221471CTMissense_MutationENST00000547392.1:c.1163C>TENSP00000446529.1:p.Thr388Ile0.13863216
P5-OrganoidGRASP1252404706GAMissense_MutationENST00000293662.4:c.338G>AENSP00000293662.4:p.Gly113Asp0.23152709
P5-OrganoidSLC17A812100774715GAMissense_MutationENST00000392989.3:c.338G>AENSP00000376715.3:p.Gly113Glu0.14814814
P5-OrganoidACADS12121176633CTMissense_MutationENST00000411593.2:c.932C>TENSP00000401045.2:p.Ala311Val0.03825136
P5-OrganoidSLC15A412129285547CACFrame_Shift_DelENST00000544112.1:c.254delENSP00000439946.1:p.Leu85TrpfsTer60.26050420
P5-OrganoidTOX41421960767CAACFrame_Shift_DelENST00000448790.2:c.924_925delENSP00000393080.2:p.Ile309ArgfsTer120.04938271
P5-OrganoidTOX41421960770TCMissense_MutationENST00000448790.2:c.926T>CENSP00000393080.2:p.Ile309Thr0.04938271
P5-OrganoidOXA1L1423236470CTMissense_MutationENST00000604262.1:c.77C>TENSP00000474623.1:p.Ala26Val0.04562737
P5-OrganoidAKAP61433004853GAMissense_MutationENST00000557354.1:c.418G>AENSP00000450531.1:p.Val140Met0.06811145
P5-OrganoidAHNAK214105411396CGMissense_MutationENST00000333244.5:c.10392G>CENSP00000353114.4:p.Lys3464Asn0.19125683
P5-OrganoidSNURF1525207326GCMissense_MutationENST00000577949.1:c.80G>CENSP00000463201.1:p.Arg27Pro0.10526315
P5-OrganoidUSP81550754515GGAAFrame_Shift_InsENST00000433963.1:c.539_540dupENSP00000405537.1:p.Gly181LysfsTer120.10526315
P5-OrganoidAKAP131586198910CTMissense_MutationENST00000394518.2:c.4637C>TENSP00000378026.2:p.Ala1546Val0.07547169
P5-OrganoidGLYR1164882093CGMissense_MutationENST00000591451.1:c.424G>CENSP00000468328.1:p.Glu142Gln0.07359307
P5-OrganoidSLC5A111624881226GTMissense_MutationENST00000569071.1:c.20G>TENSP00000456376.1:p.Gly7Val0.05882352
P5-OrganoidESRP21668266492ATMissense_MutationENST00000565858.1:c.839T>AENSP00000454554.1:p.Leu280His0.12842105
P5-OrganoidFUK1670507098CTMissense_MutationENST00000571514.1:c.98C>TENSP00000462584.1:p.Ala33Val0.23140495
P5-OrganoidPKD1L21681167189CAMissense_MutationENST00000533478.1:c.3781G>TENSP00000434644.1:p.Ala1261Ser0.12568306
P5-OrganoidPOLR2A177414827GAMissense_MutationENST00000322644.6:c.4021G>AENSP00000314949.6:p.Val1341Met0.08717948
P5-OrganoidTP53177578406CTMissense_MutationENST00000455263.2:c.524G>AENSP00000398846.2:p.Arg175His0.375
P5-OrganoidCYB5D1177762829ATCCGGAFrame_Shift_DelENST00000570446.1:c.203_207delENSP00000461852.1:p.Ile68ArgfsTer20.07017543
P5-OrganoidCCDC42178647882GAMissense_MutationENST00000539522.2:c.46C>TENSP00000444359.2:p.Arg16Trp0.05633802
P5-OrganoidDNAH91711684458CTMissense_MutationENST00000454412.2:c.7685C>TENSP00000414874.2:p.Thr2562Ile0.07894736
P5-OrganoidSPPL2C1743924263CTMissense_MutationENST00000329196.5:c.1991C>TENSP00000332488.5:p.Ala664Val0.22704081
P5-OrganoidSDK21771344846GTMissense_MutationENST00000392650.3:c.6057C>AENSP00000376421.3:p.Ser2019Arg0.29931972
P5-OrganoidCBLN21870205952GTMissense_MutationENST00000585159.1:c.413C>AENSP00000463771.1:p.Pro138Gln0.12612612
P5-OrganoidZFR2193827531CTMissense_MutationENST00000262961.4:c.973G>AENSP00000262961.3:p.Ala325Thr0.05882352
P5-OrganoidZNF6251912256195CTMissense_MutationENST00000542938.1:c.838G>AENSP00000438436.1:p.Val280Ile0.05479452
P5-OrganoidEXOSC51941897867CTMissense_MutationENST00000596905.1:c.149G>AENSP00000471002.1:p.Gly50Asp0.085
P5-OrganoidLILRB11955147987GACCMissense_MutationENST00000434867.2:c.1690_1691delinsCCENSP00000405243.2:p.Glu564Pro0.13333333
P5-OrganoidNLRP51956561882CTMissense_MutationENST00000390649.3:c.3056C>TENSP00000375063.3:p.Pro1019Leu0.02
P5-OrganoidADRA1D204228688AGMissense_MutationENST00000379453.4:c.917T>CENSP00000368766.4:p.Ile306Thr0.03143418
P5-OrganoidPROKR2205282708AGMissense_MutationENST00000546004.1:c.1133T>CENSP00000440790.1:p.Val378Ala0.03070175
P5-OrganoidJAG12010629308TCCTMissense_MutationENST00000423891.2:c.980_981delinsAGENSP00000389519.2:p.Arg327Lys0.10169491
P5-OrganoidKIAA17552036869597CAMissense_MutationENST00000279024.4:c.936G>TENSP00000279024.4:p.Lys312Asn0.19921875
P5-OrganoidADNP2049508046TCMissense_MutationENST00000396032.3:c.3205A>GENSP00000379349.2:p.Ile1069Val0.07352941
P5-OrganoidNFATC22050092093GCMissense_MutationENST00000610033.1:c.780C>GENSP00000477142.1:p.Ile260Met0.09848484
P5-OrganoidZNF8312057769069GAMissense_MutationENST00000371030.2:c.2995G>AENSP00000360069.2:p.Gly999Ser0.07291666
P5-OrganoidKRTAP13-32131797791CAMissense_MutationENST00000390690.2:c.440G>TENSP00000375109.2:p.Cys147Phe0.15107913
P5-OrganoidDOPEY22137660356GAMissense_MutationENST00000399151.3:c.6205G>AENSP00000382104.3:p.Ala2069Thr0.03809523
P5-OrganoidKRTAP10-42145994110AGMissense_MutationENST00000400374.3:c.475A>GENSP00000383225.3:p.Ile159Val0.31956912
P5-OrganoidSAMM502244392219AGMissense_MutationENST00000396202.3:c.736A>GENSP00000379505.3:p.Ile246Val0.02734375
P5-OrganoidFRMPD4X12736390CTMissense_MutationENST00000380682.1:c.3445C>TENSP00000370057.1:p.Arg1149Cys0.20338983
P5-OrganoidHEPHX65486401GAMissense_MutationENST00000519389.1:c.3526G>AENSP00000430620.1:p.Val1176Ile0.40540540
P5-OrganoidCXorf40BX149101881AGMissense_MutationENST00000462691.1:c.212T>CENSP00000417546.1:p.Leu71Ser0.03547297

Somatic Copy Number Alterations

Primary Tumor


Organoid


Concordance between Primary tumor and Organoid

VAF-VAF Plot


Number of Shared Mutations between Primary tumor and organoid (All mutations)


Number of Shared Mutations between Primary tumor and organoid (Functional mutations)


Drug Responses

IDDrugIC50
P5AZD20140.02116
P5AZD3759593.1
P5AZD4547~ 65033358449
P5AZD5363~ 199.2
P5AZD6738720.9
P5AZD92911043
P5I.BET.762~ 2.084e-013
P5Rapamycin..Sirolimus.~ 4.172
P5AZD1775..MK.1775.~ 273.6
P5Triptolide..PG490.7.575
P5Simvastatin~ 7.557e+030
P5Temozolomide~ 31.00
P5Imatinib.Mesylate..STI571.~ 5116
P5Pazopanib..GW786034.~ 25211349
P5Sunitinib.Malate~ 5075
P5Olaparib..AZD2281..KU0059436.1.312E+16
P5Regorafenib..BAY.73.4506.~ 2.040e-008
P5Erlotinib14835
P5Gefitinib~ 1.745e-015
P5Afatinib~ 1.580e+034
P5OTX.015~ 0.1004
P5BKM120..NVP.BKM120.~ 2714620108
P5BYL7192260
P5Cediranib..AZD2171.10248
P5Ceritinib.LDK378.656.5
P5Crizotinib...PF.02341066.~ 126310255
P5Dabrafenib~ 1.927e+024
P5Dacomitinib~ 3.095e-025
P5Everolimus..RAD001.92.32
P5Ibrutinib..PCI.32765.~ 299501
P5Lapatinib4428
P5LY28352191554
P5Brivanib..BMS.582664.~ 234000
P5Panobinostat24.86
P5Selumetinib..AZD6244.1540
P5Sorafenib~ 0.004153
P5Trametinib5.83
P5Vandetanib..ZD6474.1489
P5Vemurafenib~ 19976
P5AZD5153178.5
P5ABT.199..GDC.0199..~ 2.611
P5ABT.888..Veliparib..NSC.737664.~ 12.60
P5Avagacestat..BMS.708163.~ 101.3
P5Axitinib...AG.013736.~ 4.313e-015
P5Bosutinib..SKI.606.737.9
P5Cabozantinib..XL184.~ 1.730e+015
P5Dasatinib..BMS.354825.~ 7.949e-009
P5decitabine~ 2.476e-015
P5defactinib~ 1295
P5Dovitinib..TKI258.CHIR258.1850
P5Fluorouracil..5.Fluoracil..5.FU.~ 4881
P5Foretinib..XL880.515.1
P5Tivantinib..ARQ.197.28.92
P5Abraxane~ 0.01456
P5AZD2461.olaparib.analog.37.14
P5Olaparib.~ 0.07561
P5Idelalisib~ 23376
P5Irinotecan~ 4330
P5Nilotinib..AMN.107.~ 579164
P5NVP.AEW5413346
P5Oxaliplatin~ 4648
P5PLX3397~ 254413
P5Quizartinib..AC220.~ 41488
P5Saracatinib..AZD0530.867.7
P5Semagacestat..LY450139.~ 0.000
P5TGX.221~ 5443
P5tozasertib~ 71.91
P5Vorinostat..SAHA..MK0683.790.6
P5XAV939~ 607.6
P5gemcitabine780.3
P5palbociclib~ 4.150e+022
P5Neratinib..HKI.272.1621